CancerInSilico
This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see CancerInSilico.
An R interface for computational modeling of tumor progression
Bioconductor version: 3.7
The CancerInSilico package provides an R interface for running mathematical models of tumor progresson and generating gene expression data from the results. This package has the underlying models implemented in C++ and the output and analysis features implemented in R.
Author: Thomas D. Sherman, Raymond Cheng, Elana J. Fertig
Maintainer: Thomas D. Sherman <tomsherman159 at gmail.com>, Elana J. Fertig <ejfertig at jhmi.edu>
citation("CancerInSilico")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("CancerInSilico")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CancerInSilico")| The CancerInSilico Package | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | BiomedicalInformatics, CellBiology, GeneExpression, MathematicalBiology, RNASeq, SingleCell, Software, SystemsBiology |
| Version | 2.0.0 |
| In Bioconductor since | BioC 3.4 (R-3.3) (7.5 years) |
| License | GPL-2 |
| Depends | R (>= 3.4), Rcpp |
| Imports | methods, utils, graphics, stats |
| System Requirements | |
| URL |
See More
| Suggests | testthat, knitr, rmarkdown, BiocStyle, Rtsne, viridis, rgl |
| Linking To | Rcpp, BH |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | CancerInSilico_2.0.0.tar.gz |
| Windows Binary | CancerInSilico_2.0.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | CancerInSilico_2.0.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/CancerInSilico |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/CancerInSilico |
| Package Short Url | https://bioconductor.org/packages/CancerInSilico/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.7 | Source Archive |