---
title: "curatedTCGAData"
date: "`r BiocStyle::doc_date()`"
vignette: |
  %\VignetteIndexEntry{curatedTCGAData}
  %\VignetteEngine{knitr::rmarkdown}
  %\VignetteEncoding{UTF-8}
output:
  BiocStyle::html_document:
    toc_float: true
Package: curatedTCGAData
---

```{r, echo = FALSE, warning = FALSE}
suppressPackageStartupMessages({
    library(MultiAssayExperiment)
    library(curatedTCGAData)
})
```

# Installation

```{r, eval=FALSE}
source("https://bioconductor.org/biocLite.R")
BiocInstaller::biocLite("curatedTCGAData")
```

Load packages:

```{r, eval = FALSE}
library(curatedTCGAData)
library(MultiAssayExperiment)
```

Checking available cancer codes and assays:

```{r}
curatedTCGAData(diseaseCode = "*", assays = "*", dry.run = TRUE)
```

Check potential files to be downloaded:

```{r}
curatedTCGAData(diseaseCode = "COAD", assays = "RPPA*", dry.run = TRUE)
```


