## ----style, echo=FALSE, results="asis", message=FALSE-------------------- knitr::opts_chunk$set(tidy = FALSE, message = FALSE) ## ----echo=FALSE, results="hide", message=FALSE--------------------------- library("colorspace") library("Biostrings") library("ape") library("ggplot2") library("ggtree") CRANpkg <- function (pkg) { cran <- "https://CRAN.R-project.org/package" fmt <- "[%s](%s=%s)" sprintf(fmt, pkg, cran, pkg) } Biocpkg <- function (pkg) { sprintf("[%s](http://bioconductor.org/packages/%s)", pkg, pkg) } ## ----echo=FALSE---------------------------------------------------------- sessionInfo()