TransView

This package is for version 3.6 of Bioconductor; for the stable, up-to-date release version, see TransView.

Read density map construction and accession. Visualization of ChIPSeq and RNASeq data sets

Bioconductor version: 3.6

This package provides efficient tools to generate, access and display read densities of sequencing based data sets such as from RNA-Seq and ChIP-Seq.

Author: Julius Muller

Maintainer: Julius Muller <ju-mu at alumni.ethz.ch>

Citation (from within R, enter citation("TransView")):

To install this package, start R (version "3.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TransView")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TransView")

An introduction to TransView	PDF	R Script
Reference Manual	PDF
NEWS	Text

biocViews	ChIPSeq, Clustering, DNAMethylation, DataImport, GeneExpression, MethylSeq, Microarray, MultipleComparison, RNASeq, Sequencing, Software, Transcription, Visualization
Version	1.22.0
In Bioconductor since	BioC 2.11 (R-2.15) (11.5 years)
License	GPL-3
Depends	methods, GenomicRanges
Imports	BiocGenerics, S4Vectors(>= 0.9.25), IRanges, Rsamtools(>= 1.19.38), zlibbioc, gplots
System Requirements
URL	http://bioconductor.org/packages/release/bioc/html/TransView.html

Follow Installation instructions to use this package in your R session.

Source Package	TransView_1.22.0.tar.gz
Windows Binary	TransView_1.22.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	TransView_1.22.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/TransView
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/TransView
Package Short Url	https://bioconductor.org/packages/TransView/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.6	Source Archive