RnaSeqGeneEdgeRQL
This package is for version 3.6 of Bioconductor; for the stable, up-to-date release version, see RnaSeqGeneEdgeRQL.
Gene-level RNA-seq differential expression and pathway analysis using Rsubread and the edgeR quasi-likelihood pipeline
Bioconductor version: 3.6
A workflow package for RNA-Seq experiments
Author: Yunshun Chen <yuchen at wehi.edu.au>, Aaron Lun <alun at wehi.edu.au>, Gordon Smyth <smyth at wehi.edu.au>
Maintainer: Yunshun Chen <yuchen at wehi.edu.au>
Citation (from within R, enter
citation("RnaSeqGeneEdgeRQL")):
Installation
To install this package, start R (version "3.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RnaSeqGeneEdgeRQL")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | Software, WorkflowStep |
| Version | 1.1.0 |
| License | Artistic-2.0 |
| Depends | R (>= 3.3.0), edgeR, gplots, org.Mm.eg.db, GO.db |
| Imports | |
| System Requirements | |
| URL | http://f1000research.com/articles/5-1438/v2 |
See More
| Suggests | knitr, knitcitations |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | RnaSeqGeneEdgeRQL_1.1.0.tar.gz |
| Windows Binary | RnaSeqGeneEdgeRQL_1.1.0.zip |
| Mac OS X 10.11 (El Capitan) | RnaSeqGeneEdgeRQL_1.1.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/RnaSeqGeneEdgeRQL |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/RnaSeqGeneEdgeRQL |
| Package Short Url | https://bioconductor.org/packages/RnaSeqGeneEdgeRQL/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.6 | Source Archive |