RamiGO

This package is for version 3.6 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see RamiGO.

AmiGO visualize R interface

Bioconductor version: 3.6

R interface sending requests to AmiGO visualize, retrieving DAG GO trees, parsing GraphViz DOT format files and exporting GML files for Cytoscape. Also uses RCytoscape to interactively display AmiGO trees in Cytoscape.

Author: Markus Schroeder, Daniel Gusenleitner, John Quackenbush, Aedin Culhane, Benjamin Haibe-Kains

Maintainer: Markus Schroeder <markus.schroeder at ucdconnect.ie>

Citation (from within R, enter citation("RamiGO")):

Installation

To install this package, start R (version "3.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RamiGO")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RamiGO")

RamiGO: An Introduction (HowTo)	PDF	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Classification, GO, GraphAndNetwork, Software, ThirdPartyClient, Visualization
Version	1.23.0
In Bioconductor since	BioC 2.9 (R-2.14) (12.5 years)
License	Artistic-2.0
Depends	gsubfn, methods
Imports	igraph, RCurl, png, RCytoscape, graph
System Requirements
URL

Suggests
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	RamiGO_1.23.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/RamiGO
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/RamiGO
Package Short Url	https://bioconductor.org/packages/RamiGO/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.6	Source Archive