MSstats
This package is for version 3.6 of Bioconductor; for the stable, up-to-date release version, see MSstats.
Protein Significance Analysis in DDA, SRM and DIA for Label-free or Label-based Proteomics Experiments
Bioconductor version: 3.6
A set of tools for statistical relative protein significance analysis in DDA, SRM and DIA experiments.
Author: Meena Choi [aut, cre], Cyril Galitzine [aut], Tsung-Heng Tsai [aut], Olga Vitek [aut]
Maintainer: Meena Choi <mnchoi67 at gmail.com>
Citation (from within R, enter
citation("MSstats")):
Installation
To install this package, start R (version "3.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MSstats")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual | |
| NEWS | Text |
Details
| biocViews | MassSpectrometry, Normalization, Proteomics, QualityControl, Software, TimeCourse |
| Version | 3.10.6 |
| In Bioconductor since | BioC 2.13 (R-3.0) (10.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.4) |
| Imports | Rcpp, lme4, marray, limma, gplots, ggplot2, methods, grid, ggrepel, preprocessCore, MSnbase, reshape2, survival, minpack.lm, utils, grDevices, graphics, stats, doSNOW, snow, foreach, data.table, MASS, dplyr, tidyr, purrr, stringr, broom |
| System Requirements | |
| URL | http://msstats.org |
| Bug Reports | https://groups.google.com/forum/#!forum/msstats |
See More
| Suggests | BiocStyle, knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | MSstatsBioData |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | MSstats_3.10.6.tar.gz |
| Windows Binary | MSstats_3.10.6.zip |
| Mac OS X 10.11 (El Capitan) | MSstats_3.10.6.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/MSstats |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MSstats |
| Package Short Url | https://bioconductor.org/packages/MSstats/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.6 | Source Archive |