Logolas
This package is for version 3.6 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see Logolas.
Flexible and Customized Logo Plots using symbols, alphabets, numbers and alphanumeric strings
Bioconductor version: 3.6
Produces logo plots of a variety of symbols and names comprising English alphabets, numerics and punctuations. Can be used for sequence motif generation, mutation pattern generation, protein amino acid geenration and symbol strength representation in any generic context.
Author: Kushal Dey [aut, cre]
Maintainer: Kushal Dey <kkdey at uchicago.edu>
citation("Logolas")):
Installation
To install this package, start R (version "3.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Logolas")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Logolas")| Flexible Logo plots of symbols and alphanumeric strings using Logolas | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Alignment, SequenceMatching, Software, Visualization |
| Version | 1.2.0 |
| In Bioconductor since | BioC 3.5 (R-3.4) (7 years) |
| License | GPL (>= 2) |
| Depends | R (>= 3.4) |
| Imports | grid, graphics |
| System Requirements | |
| URL | https://github.com/kkdey/Logolas |
See More
| Suggests | knitr, BiocStyle, Biobase, roxygen2, devtools, xtable, gridExtra, RColorBrewer, seqLogo, aRxiv |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | Logolas_1.2.0.tar.gz |
| Windows Binary | Logolas_1.2.0.zip |
| Mac OS X 10.11 (El Capitan) | Logolas_1.2.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/Logolas |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Logolas |
| Package Short Url | https://bioconductor.org/packages/Logolas/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.6 | Source Archive |