BioMedR
This package is for version 3.6 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see BioMedR.
Generating Various Molecular Representations for Chemicals, Proteins, DNAs/RNAs and Their Interactions
Bioconductor version: 3.6
The BioMedR package offers an R/Bioconductor package generating various molecular representations for chemicals, proteins, DNAs/RNAs and their interactions.
Author: Min-feng Zhu <wind2zhu at 163.com>, Jie Dong <biomed at csu.edu.cn>, Dong-sheng Cao <oriental-cds at 163.com>
Maintainer: Min-feng Zhu <wind2zhu at 163.com>
citation("BioMedR")):
Installation
To install this package, start R (version "3.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("BioMedR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("BioMedR")| BioMedR: R/Bioconductor Package for generating various molecular representations for chemicals, proteins, DNAs/RNAs and their interactions | R Script | |
| Reference Manual | ||
| README | Text | |
| NEWS | Text |
Details
| biocViews | BiomedicalInformatics, Cheminformatics, DataImport, DataRepresentation, FeatureExtraction, GO, GraphAndNetwork, Proteomics, Software, SystemsBiology |
| Version | 1.1.0 |
| In Bioconductor since | BioC 3.5 (R-3.4) (7 years) |
| License | Artistic-2.0 |
| Depends | |
| Imports | RCurl, rjson, rcdk (>= 3.3.2), foreach, doParallel, Biostrings, GOSemSim, ChemmineR, fmcsR, pls, randomForest, utils, stats, graphics, methods, org.Hs.eg.db, ChemmineOB |
| System Requirements | Java JDK 1.8 or higher |
| URL | https://github.com/wind22zhu/BioMedR |
| Bug Reports | https://github.com/wind22zhu/BioMedR/issues |
See More
| Suggests | RUnit, BiocGenerics |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | BioMedR_1.1.0.tar.gz |
| Windows Binary | BioMedR_1.1.0.zip |
| Mac OS X 10.11 (El Capitan) | BioMedR_1.1.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/BioMedR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/BioMedR |
| Package Short Url | https://bioconductor.org/packages/BioMedR/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.6 | Source Archive |