- Home
- Bioconductor 3.5
- Experiment Packages
- DAPARdata
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("DAPARdata")
In most cases, you don't need to download the package archive at all.
DAPARdata
|
|
|
|
Data accompanying the DAPAR and Prostar packages
Bioconductor version: Release (3.5)
Mass-spectrometry based UPS proteomics data sets from Ramus C, Hovasse A, Marcellin M, Hesse AM, Mouton-Barbosa E, Bouyssie D, Vaca S, Carapito C, Chaoui K, Bruley C, Garin J, Cianferani S, Ferro M, Dorssaeler AV, Burlet-Schiltz O, Schaeffer C, Coute Y, Gonzalez de Peredo A. Spiked proteomic standard dataset for testing label-free quantitative software and statistical methods. Data Brief. 2015 Dec 17;6:286-94 and Giai Gianetto, Q., Combes, F., Ramus, C., Bruley, C., Coute, Y., Burger, T. (2016). Calibration plot for proteomics: A graphical tool to visually check the assumptions underlying FDR control in quantitative experiments. Proteomics, 16(1), 29-32.
Author: Samuel Wieczorek and Florence Combes
Maintainer: Samuel Wieczorek <samuel.wieczorek at cea.fr>
Citation (from within R,
enter citation("DAPARdata")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("DAPARdata")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("DAPARdata")
| Exp1_R25_pept.pdf | ||
| Exp1_R25_prot.pdf | ||
| Exp1_R2_pept.pdf | ||
| Exp1_R2_prot.pdf | ||
| Exp2_R100_pept.pdf | ||
| Exp2_R100_prot.pdf | ||
| Exp2_R10_pept.pdf | ||
| Exp2_R10_prot.pdf | ||
| Exp2_R2_pept.pdf | ||
| Exp2_R2_prot.pdf | ||
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | ExperimentData, MassSpectrometryData |
| Version | 1.4.0 |
| License | GPL-2 |
| Depends | R (>= 3.3) |
| Imports | utils, knitr, MSnbase |
| LinkingTo | |
| Suggests | DAPAR, Prostar |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | DAPAR, Prostar |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | DAPARdata_1.4.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.11 (El Capitan) | |
| Source Repository | git clone https://git.bioconductor.org/packages/DAPARdata |
| Package Short Url | http://bioconductor.org/packages/DAPARdata/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
