Changes in version 1.1.0:
o Normalization factors in differential loop calling are inferred from
the loops object if present.
o Added functions to annotate loops with differential expression and
subset only differential enhancer-promoter loops.
o Added function to annotate anchors with numeric scores from .bigwig
and .bed files.
o Functions that support integration of transcription data.
o Support for reading in files processed by mango now available in the
loopsMake.mango function.
o Implemented mango bias corrected statistics in mangoCorrection
function.
o Significant rewrite of the vignette.
o Consolidation of loopFit object to loops object.
Changes in version 1.0.0:
o Initial release to Bioconductor.
o Added NEWS file.
o Fixes to documentation.
o Improved automated ploting including different colors.
o Enhanced loop annotation.