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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("splatter")
In most cases, you don't need to download the package archive at all.
splatter
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Simple Simulation of Single-cell RNA Sequencing Data
Bioconductor version: Release (3.5)
Splatter is a package for the simulation of single-cell RNA sequencing count data. It provides a simple interface for creating complex simulations that are reproducible and well-documented. Parameters can be estimated from real data and functions are provided for comparing real and simulated datasets.
Author: Luke Zappia
Maintainer: Luke Zappia <luke.zappia at mcri.edu.au>
Citation (from within R,
enter citation("splatter")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("splatter")
Documentation
| HTML | R Script | An introduction to the Splatter package |
| Reference Manual | ||
| Text | NEWS | |
| Text | LICENSE |
Details
| biocViews | GeneExpression, RNASeq, Sequencing, SingleCell, Software, Transcriptomics |
| Version | 1.0.3 |
| In Bioconductor since | BioC 3.5 (R-3.4) (0.5 years) |
| License | GPL-3 + file LICENSE |
| Depends | R (>= 3.4), scater |
| Imports | fitdistrplus, edgeR, stats, locfit, akima, Biobase, checkmate, methods, utils, matrixStats, ggplot2, scales, BiocParallel |
| LinkingTo | |
| Suggests | testthat, scran, progress, lme4, pscl, scDD, knitr, rmarkdown, BiocStyle, covr, S4Vectors, SummarizedExperiment, cowplot |
| SystemRequirements | |
| Enhances | |
| URL | https://github.com/Oshlack/splatter |
| BugReports | https://github.com/Oshlack/splatter/issues |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | splatter_1.0.3.tar.gz |
| Windows Binary | splatter_1.0.3.zip |
| Mac OS X 10.11 (El Capitan) | splatter_1.0.3.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/splatter |
| Package Short Url | http://bioconductor.org/packages/splatter/ |
| Package Downloads Report | Download Stats |
Documentation »
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