To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("scone")
In most cases, you don't need to download the package archive at all.
scone
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Single Cell Overview of Normalized Expression data
Bioconductor version: Release (3.5)
SCONE is an R package for comparing and ranking the performance of different normalization schemes for single-cell RNA-seq and other high-throughput analyses.
Author: Michael Cole [aut, cre, cph], Davide Risso [aut, cph]
Maintainer: Michael Cole <mbeloc at gmail.com>
Citation (from within R,
enter citation("scone")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("scone")
Documentation
| HTML | R Script | scone Vignette |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Coverage, GeneExpression, Normalization, Preprocessing, QualityControl, RNASeq, Sequencing, SingleCell, Software, Transcriptomics |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.5 (R-3.4) (0.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.4), methods, SummarizedExperiment |
| Imports | graphics, stats, utils, aroma.light, BiocParallel, class, cluster, compositions, diptest, EDASeq, scran, edgeR, fpc, gplots, grDevices, hexbin, limma, matrixStats, mixtools, RColorBrewer, boot, shiny, miniUI, rhdf5, RUVSeq, DT, NMF, ggplot2, plotly, reshape2, visNetwork, rARPACK |
| LinkingTo | |
| Suggests | BiocStyle, scRNAseq, knitr, rmarkdown, testthat |
| SystemRequirements | |
| Enhances | |
| URL | |
| BugReports | https://github.com/YosefLab/scone/issues |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | scone_1.0.0.tar.gz |
| Windows Binary | scone_1.0.0.zip |
| Mac OS X 10.11 (El Capitan) | scone_1.0.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/scone |
| Package Short Url | http://bioconductor.org/packages/scone/ |
| Package Downloads Report | Download Stats |
Documentation »
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