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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("regioneR")
In most cases, you don't need to download the package archive at all.
regioneR
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Association analysis of genomic regions based on permutation tests
Bioconductor version: Release (3.5)
regioneR offers a statistical framework based on customizable permutation tests to assess the association between genomic region sets and other genomic features.
Author: Anna Diez-Villanueva <adiez at imppc.org>, Roberto Malinverni <rmalinverni at carrerasresearch.org> and Bernat Gel <bgel at imppc.org>
Maintainer: Bernat Gel <bgel at imppc.org>
Citation (from within R,
enter citation("regioneR")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("regioneR")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("regioneR")
| R Script | regioneR vignette | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | ChIPSeq, CopyNumberVariation, DNASeq, Genetics, MethylSeq, Software |
| Version | 1.8.1 |
| In Bioconductor since | BioC 3.1 (R-3.2) (2.5 years) |
| License | Artistic-2.0 |
| Depends | memoise, GenomicRanges, BSgenome, rtracklayer, parallel |
| Imports | memoise, GenomicRanges, BSgenome, rtracklayer, parallel, graphics, stats, utils, GenomeInfoDb, IRanges |
| LinkingTo | |
| Suggests | BiocStyle, knitr, BSgenome.Hsapiens.UCSC.hg19.masked, testthat |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | karyoploteR |
| Imports Me | annotatr, ChIPpeakAnno, karyoploteR |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | regioneR_1.8.1.tar.gz |
| Windows Binary | regioneR_1.8.1.zip |
| Mac OS X 10.11 (El Capitan) | regioneR_1.8.1.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/regioneR |
| Package Short Url | http://bioconductor.org/packages/regioneR/ |
| Package Downloads Report | Download Stats |
Documentation »
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