To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("rDGIdb")
In most cases, you don't need to download the package archive at all.
rDGIdb
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R Wrapper for DGIdb
Bioconductor version: Release (3.5)
The rDGIdb package provides a wrapper for the Drug Gene Interaction Database (DGIdb). For simplicity, the wrapper query function and output resembles the user interface and results format provided on the DGIdb website (http://dgidb.genome.wustl.edu/).
Author: Thomas Thurnherr, Franziska Singer, Daniel J. Stekhoven, and Niko Beerenwinkel
Maintainer: Thomas Thurnherr <thomas.thurnherr at bsse.ethz.ch>
Citation (from within R,
enter citation("rDGIdb")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("rDGIdb")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("rDGIdb")
| R Script | Query DGIdb using R | |
| Reference Manual | ||
| Text | NEWS | |
| Text | LICENSE |
Details
| biocViews | Annotation, FunctionalGenomics, Pharmacogenetics, Pharmacogenomics, ResearchField, Software, WorkflowStep |
| Version | 1.2.1 |
| In Bioconductor since | BioC 3.4 (R-3.3) (1 year) |
| License | MIT + file LICENSE |
| Depends | |
| Imports | jsonlite, httr, methods, graphics |
| LinkingTo | |
| Suggests | BiocStyle, knitr, testthat |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | rDGIdb_1.2.1.tar.gz |
| Windows Binary | rDGIdb_1.2.1.zip |
| Mac OS X 10.11 (El Capitan) | rDGIdb_1.2.1.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/rDGIdb |
| Package Short Url | http://bioconductor.org/packages/rDGIdb/ |
| Package Downloads Report | Download Stats |
Documentation »
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