- Home
- Bioconductor 3.5
- Software Packages
- methylPipe
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("methylPipe")
In most cases, you don't need to download the package archive at all.
methylPipe
|
|
|
|
|
Base resolution DNA methylation data analysis
Bioconductor version: Release (3.5)
Memory efficient analysis of base resolution DNA methylation data in both the CpG and non-CpG sequence context. Integration of DNA methylation data derived from any methodology providing base- or low-resolution data.
Author: Kamal Kishore
Maintainer: Kamal Kishore <kamal.fartiyal84 at gmail.com>
Citation (from within R,
enter citation("methylPipe")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("methylPipe")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("methylPipe")
| R Script | methylPipe.pdf | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Coverage, DNAMethylation, MethylSeq, Sequencing, Software |
| Version | 1.10.0 |
| In Bioconductor since | BioC 3.0 (R-3.1) (3 years) |
| License | GPL(>=2) |
| Depends | R (>= 3.2.0), methods, grDevices, graphics, stats, utils, GenomicRanges, SummarizedExperiment(>= 0.2.0), Rsamtools |
| Imports | marray, gplots, IRanges, BiocGenerics, Gviz, GenomicAlignments, Biostrings, parallel, data.table, GenomeInfoDb, S4Vectors |
| LinkingTo | |
| Suggests | BSgenome.Hsapiens.UCSC.hg18, TxDb.Hsapiens.UCSC.hg18.knownGene, knitr, MethylSeekR |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | ListerEtAlBSseq |
| Imports Me | compEpiTools |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | methylPipe_1.10.0.tar.gz |
| Windows Binary | methylPipe_1.10.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | methylPipe_1.10.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/methylPipe |
| Package Short Url | http://bioconductor.org/packages/methylPipe/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
