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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("makecdfenv")
In most cases, you don't need to download the package archive at all.
makecdfenv
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CDF Environment Maker
Bioconductor version: Release (3.5)
This package has two functions. One reads a Affymetrix chip description file (CDF) and creates a hash table environment containing the location/probe set membership mapping. The other creates a package that automatically loads that environment.
Author: Rafael A. Irizarry <rafa at jhu.edu>, Laurent Gautier <laurent at cbs.dtu.dk>, Wolfgang Huber <w.huber at dkfz-heidelberg.de>, Ben Bolstad <bmb at bmbolstad.com>
Maintainer: James W. MacDonald <jmacdon at u.washington.edu>
Citation (from within R,
enter citation("makecdfenv")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("makecdfenv")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("makecdfenv")
| R Script | makecdfenv primer | |
| Reference Manual |
Details
| biocViews | DataImport, OneChannel, Preprocessing, Software |
| Version | 1.52.0 |
| In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 12.5 years) |
| License | GPL (>= 2) |
| Depends | R (>= 2.6.0), affyio |
| Imports | Biobase, affy, methods, stats, utils, zlibbioc |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | altcdfenvs |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | makecdfenv_1.52.0.tar.gz |
| Windows Binary | makecdfenv_1.52.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | makecdfenv_1.52.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/makecdfenv |
| Package Short Url | http://bioconductor.org/packages/makecdfenv/ |
| Package Downloads Report | Download Stats |
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