- Home
- Bioconductor 3.5
- Software Packages
- funtooNorm
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("funtooNorm")
In most cases, you don't need to download the package archive at all.
funtooNorm
|
|
|
|
|
Normalization Procedure for Infinium HumanMethylation450 BeadChip Kit
Bioconductor version: Release (3.5)
Provides a function to normalize Illumina Infinium Human Methylation 450 BeadChip (Illumina 450K), correcting for tissue and/or cell type.
Author: Celia Greenwood <celia.greenwood at mcgill.ca>,Stepan Grinek <stepan.grinek at ladydavis.ca>, Maxime Turgeon <maxime.turgeon at mail.mcgill.ca>, Kathleen Klein <kathleen.klein at mail.mcgill.ca>
Maintainer: Kathleen Klein <kathleen.klein at mail.mcgill.ca>
Citation (from within R,
enter citation("funtooNorm")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("funtooNorm")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("funtooNorm")
| R Script | Normalizing Illumina Infinium Human Methylation 450k for multiple cell types with funtooNorm | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | DNAMethylation, Normalization, Preprocessing, Software |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.5 (R-3.4) (0.5 years) |
| License | GPL-3 |
| Depends | R (>= 3.4) |
| Imports | pls, matrixStats, minfi, methods, IlluminaHumanMethylation450kmanifest, IlluminaHumanMethylation450kanno.ilmn12.hg19, GenomeInfoDb, grDevices, graphics, stats |
| LinkingTo | |
| Suggests | BiocStyle, minfiData, knitr, rmarkdown |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | funtooNorm_1.0.0.tar.gz |
| Windows Binary | funtooNorm_1.0.0.zip |
| Mac OS X 10.11 (El Capitan) | funtooNorm_1.0.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/funtooNorm |
| Package Short Url | http://bioconductor.org/packages/funtooNorm/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
