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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("cellbaseR")
In most cases, you don't need to download the package archive at all.
cellbaseR
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Querying annotation data from the high performance Cellbase web services
Bioconductor version: Release (3.5)
This R package makes use of the exhaustive RESTful Web service API that has been implemented for the Cellabase database. It enable researchers to query and obtain a wealth of biological information from a single database saving a lot of time. Another benefit is that researchers can easily make queries about different biological topics and link all this information together as all information is integrated.
Author: Mohammed OE Abdallah
Maintainer: Mohammed OE Abdallah <melsiddieg at gmail.com>
Citation (from within R,
enter citation("cellbaseR")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("cellbaseR")
Documentation
| HTML | R Script | Simplifying Genomic Annotations in R |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Annotation, Software, VariantAnnotation |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.5 (R-3.4) (0.5 years) |
| License | Apache License (== 2.0) |
| Depends | R (>= 3.4) |
| Imports | methods, jsonlite, httr, data.table, pbapply, tidyr, R.utils, Rsamtools, BiocParallel, foreach, utils, parallel, doParallel |
| LinkingTo | |
| Suggests | BiocStyle, knitr, rmarkdown, Gviz, VariantAnnotation |
| SystemRequirements | |
| Enhances | |
| URL | https://github.com/melsiddieg/cellbaseR |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | cellbaseR_1.0.0.tar.gz |
| Windows Binary | cellbaseR_1.0.0.zip |
| Mac OS X 10.11 (El Capitan) | cellbaseR_1.0.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/cellbaseR |
| Package Short Url | http://bioconductor.org/packages/cellbaseR/ |
| Package Downloads Report | Download Stats |
Documentation »
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