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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RTNduals")
In most cases, you don't need to download the package archive at all.
RTNduals
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Analysis of co-regulatory network motifs and inference of 'dual regulons'
Bioconductor version: Release (3.5)
RTNduals is a tool that searches for possible co-regulatory loops between regulon pairs generated by the RTN package. It compares the shared targets in order to infer 'dual regulons', a new concept that tests whether regulon pairs agree on the predicted downstream effects.
Author: Vinicius S. Chagas, Clarice S. Groeneveld, Gordon Robertson, Kerstin B. Meyer, Mauro A. A. Castro
Maintainer: Vinicius Chagas <vinicius.chagas at ufpr.br>, Mauro Castro <mauro.castro at ufpr.br>, Clarice Groeneveld <clari.groeneveld at gmail.com>
Citation (from within R,
enter citation("RTNduals")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RTNduals")
Documentation
| HTML | R Script | RTNduals: An R/Bioconductor package for analysis of co-regulatory network motifs and inference of 'dual regulons'. |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | GeneExpression, GeneRegulation, GeneSetEnrichment, GeneticVariability, GraphAndNetwork, NetworkEnrichment, NetworkInference, Software |
| Version | 1.0.3 |
| In Bioconductor since | BioC 3.5 (R-3.4) (0.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.4), methods, RTN |
| Imports | graphics, grDevices, stats, utils |
| LinkingTo | |
| Suggests | knitr, rmarkdown, BiocStyle, RUnit, BiocGenerics |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | RTNduals_1.0.3.tar.gz |
| Windows Binary | RTNduals_1.0.3.zip |
| Mac OS X 10.11 (El Capitan) | RTNduals_1.0.3.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/RTNduals |
| Package Short Url | http://bioconductor.org/packages/RTNduals/ |
| Package Downloads Report | Download Stats |
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