To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("OGSA")
In most cases, you don't need to download the package archive at all.
OGSA
|
|
|
|
|
Outlier Gene Set Analysis
Bioconductor version: Release (3.5)
OGSA provides a global estimate of pathway deregulation in cancer subtypes by integrating the estimates of significance for individual pathway members that have been identified by outlier analysis.
Author: Michael F. Ochs <ochsm at tcnj.edu>
Maintainer: Michael F. Ochs <ochsm at tcnj.edu>
Citation (from within R,
enter citation("OGSA")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("OGSA")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("OGSA")
| R Script | OGSA Users Manual | |
| Reference Manual |
Details
| biocViews | CopyNumberVariation, GeneExpression, Microarray, Software |
| Version | 1.6.0 |
| In Bioconductor since | BioC 3.2 (R-3.2) (2 years) |
| License | GPL (== 2) |
| Depends | R (>= 3.2.0) |
| Imports | gplots (>= 2.8.0), limma(>= 3.18.13), Biobase |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | OGSA_1.6.0.tar.gz |
| Windows Binary | OGSA_1.6.0.zip |
| Mac OS X 10.11 (El Capitan) | OGSA_1.6.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/OGSA |
| Package Short Url | http://bioconductor.org/packages/OGSA/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
