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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MSGFplus")
In most cases, you don't need to download the package archive at all.
MSGFplus
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An interface between R and MS-GF+
Bioconductor version: Release (3.5)
This package contains function to perform peptide identification using the MS-GF+ algorithm. The package contains functionality for building up a parameter set both in code and through a simple GUI, as well as running the algorithm in batches, potentially asynchronously.
Author: Thomas Lin Pedersen
Maintainer: Thomas Lin Pedersen <thomasp85 at gmail.com>
Citation (from within R,
enter citation("MSGFplus")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MSGFplus")
Documentation
| HTML | R Script | Using MSGFgui |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | MassSpectrometry, Proteomics, Software |
| Version | 1.10.1 |
| In Bioconductor since | BioC 3.0 (R-3.1) (3 years) |
| License | GPL (>= 2) |
| Depends | methods |
| Imports | mzID, ProtGenerics |
| LinkingTo | |
| Suggests | gWidgets, knitr, testthat |
| SystemRequirements | Java (>= 1.7) |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | MSGFgui |
| Suggests Me | RforProteomics |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | MSGFplus_1.10.1.tar.gz |
| Windows Binary | MSGFplus_1.10.1.zip |
| Mac OS X 10.11 (El Capitan) | MSGFplus_1.10.1.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/MSGFplus |
| Package Short Url | http://bioconductor.org/packages/MSGFplus/ |
| Package Downloads Report | Download Stats |
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