To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GSReg")
In most cases, you don't need to download the package archive at all.
GSReg
|
|
|
|
|
Gene Set Regulation (GS-Reg)
Bioconductor version: Release (3.5)
A package for gene set analysis based on the variability of expressions as well as a method to detect Alternative Splicing Events . It implements DIfferential RAnk Conservation (DIRAC) and gene set Expression Variation Analysis (EVA) methods. For detecting Differentially Spliced genes, it provides an implementation of the Spliced-EVA (SEVA).
Author: Bahman Afsari <bahman at jhu.edu>, Elana J. Fertig <ejfertig at jhmi.edu>
Maintainer: Bahman Afsari <bahman at jhu.edu>, Elana J. Fertig <ejfertig at jhmi.edu>
Citation (from within R,
enter citation("GSReg")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GSReg")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GSReg")
| R Script | Working with the GSReg package | |
| Reference Manual |
Details
| biocViews | AlternativeSplicing, GeneExpression, GeneRegulation, GeneSetEnrichment, GeneticVariability, Pathways, Software |
| Version | 1.10.0 |
| In Bioconductor since | BioC 3.0 (R-3.1) (3 years) |
| License | GPL-2 |
| Depends | R (>= 2.13.1), Homo.sapiens, org.Hs.eg.db, GenomicFeatures, AnnotationDbi |
| Imports | |
| LinkingTo | |
| Suggests | GenomicRanges, GSBenchMark |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | GSReg_1.10.0.tar.gz |
| Windows Binary | GSReg_1.10.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | GSReg_1.10.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/GSReg |
| Package Short Url | http://bioconductor.org/packages/GSReg/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
