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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GRridge")
In most cases, you don't need to download the package archive at all.
GRridge
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Better prediction by use of co-data: Adaptive group-regularized ridge regression
Bioconductor version: Release (3.5)
This package allows the use of multiple sources of co-data (e.g. external p-values, gene lists, annotation) to improve prediction of binary, continuous and survival response using (logistic, linear or Cox) group-regularized ridge regression. It also facilitates post-hoc variable selection and prediction diagnostics by cross-validation using ROC curves and AUC.
Author: Mark A. van de Wiel <mark.vdwiel at vumc.nl>
Maintainer: Mark A. van de Wiel <mark.vdwiel at vumc.nl>
Citation (from within R,
enter citation("GRridge")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GRridge")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GRridge")
| R Script | GRridge | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Bayesian, Classification, GO, GeneExpression, GenePrediction, GeneSetEnrichment, GraphAndNetwork, KEGG, Pathways, RNASeq, Regression, Software, Survival |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.5 (R-3.4) (0.5 years) |
| License | GPL-3 |
| Depends | R (>= 3.3), penalized, Iso, survival, GSEABase, BiocGenerics, Biobase, annotate, methods, graph, stats |
| Imports | |
| LinkingTo | |
| Suggests | testthat |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | GRridge_1.0.0.tar.gz |
| Windows Binary | GRridge_1.0.0.zip |
| Mac OS X 10.11 (El Capitan) | GRridge_1.0.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/GRridge |
| Package Short Url | http://bioconductor.org/packages/GRridge/ |
| Package Downloads Report | Download Stats |
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