To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GEM")
In most cases, you don't need to download the package archive at all.
GEM
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This package is for version 3.5 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see RMAGEML.
GEM: fast association study for the interplay of Gene, Environment and Methylation
Bioconductor version: Release (3.5)
Tools for analyzing EWAS, methQTL and GxE genome widely.
Author: Hong Pan, Joanna D Holbrook, Neerja Karnani, Chee-Keong Kwoh
Maintainer: Hong Pan <pan_hong at sics.a-star.edu.sg>
Citation (from within R,
enter citation("GEM")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GEM")
Documentation
| HTML | R Script | The GEM User's Guide |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | DNAMethylation, GUI, GeneExpression, GenomeWideAssociation, MethylSeq, MethylationArray, Regression, SNP, Software |
| Version | 1.2.0 |
| In Bioconductor since | BioC 3.4 (R-3.3) (1 year) |
| License | Artistic-2.0 |
| Depends | R (>= 3.3) |
| Imports | tcltk, ggplot2, methods, stats, grDevices, graphics, utils |
| LinkingTo | |
| Suggests | knitr, RUnit, testthat, BiocGenerics |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | GEM_1.2.0.tar.gz |
| Windows Binary | GEM_1.2.0.zip |
| Mac OS X 10.11 (El Capitan) | GEM_1.2.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/GEM |
| Package Short Url | http://bioconductor.org/packages/GEM/ |
| Package Downloads Report | Download Stats |
Documentation »
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