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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("EmpiricalBrownsMethod")
In most cases, you don't need to download the package archive at all.
EmpiricalBrownsMethod
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Uses Brown's method to combine p-values from dependent tests
Bioconductor version: Release (3.5)
Combining P-values from multiple statistical tests is common in bioinformatics. However, this procedure is non-trivial for dependent P-values. This package implements an empirical adaptation of Brown’s Method (an extension of Fisher’s Method) for combining dependent P-values which is appropriate for highly correlated data sets found in high-throughput biological experiments.
Author: William Poole
Maintainer: David Gibbs <dgibbs at systemsbiology.org>
Citation (from within R,
enter citation("EmpiricalBrownsMethod")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("EmpiricalBrownsMethod")
Documentation
| HTML | R Script | Empirical Browns Method |
| Reference Manual | ||
| Text | NEWS | |
| Text | LICENSE |
Details
| biocViews | GeneExpression, Pathways, Software, StatisticalMethod |
| Version | 1.4.0 |
| In Bioconductor since | BioC 3.3 (R-3.3) (1.5 years) |
| License | MIT + file LICENSE |
| Depends | R (>= 3.2.0) |
| Imports | |
| LinkingTo | |
| Suggests | BiocStyle, testthat, knitr, rmarkdown |
| SystemRequirements | |
| Enhances | |
| URL | https://github.com/IlyaLab/CombiningDependentPvaluesUsingEBM.git |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | EmpiricalBrownsMethod_1.4.0.tar.gz |
| Windows Binary | EmpiricalBrownsMethod_1.4.0.zip |
| Mac OS X 10.11 (El Capitan) | EmpiricalBrownsMethod_1.4.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/EmpiricalBrownsMethod |
| Package Short Url | http://bioconductor.org/packages/EmpiricalBrownsMethod/ |
| Package Downloads Report | Download Stats |
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