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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("EBImage")
In most cases, you don't need to download the package archive at all.
EBImage
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Image processing and analysis toolbox for R
Bioconductor version: Release (3.5)
EBImage provides general purpose functionality for image processing and analysis. In the context of (high-throughput) microscopy-based cellular assays, EBImage offers tools to segment cells and extract quantitative cellular descriptors. This allows the automation of such tasks using the R programming language and facilitates the use of other tools in the R environment for signal processing, statistical modeling, machine learning and visualization with image data.
Author: Andrzej Oleś, Gregoire Pau, Mike Smith, Oleg Sklyar, Wolfgang Huber, with contributions from Joseph Barry and Philip A. Marais
Maintainer: Andrzej Oleś <andrzej.oles at embl.de>
Citation (from within R,
enter citation("EBImage")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("EBImage")
Documentation
| HTML | R Script | Introduction to EBImage |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Software, Visualization |
| Version | 4.18.3 |
| In Bioconductor since | BioC 1.8 (R-2.3) (11.5 years) |
| License | LGPL |
| Depends | |
| Imports | BiocGenerics(>= 0.7.1), methods, graphics, grDevices, stats, abind, tiff, jpeg, png, locfit, fftwtools (>= 0.9-7), utils |
| LinkingTo | |
| Suggests | BiocStyle, digest, knitr, rmarkdown |
| SystemRequirements | |
| Enhances | |
| URL | https://github.com/aoles/EBImage |
| BugReports | https://github.com/aoles/EBImage/issues |
| Depends On Me | CRImage, DonaPLLP2013, FISHalyseR, flowcatchR, furrowSeg, HD2013SGI, imageHTS, PGPC |
| Imports Me | CONFESS, flowCHIC, heatmaps, MaxContrastProjection, yamss |
| Suggests Me | DmelSGI, ggtree, HilbertVis, tofsims |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | EBImage_4.18.3.tar.gz |
| Windows Binary | EBImage_4.18.3.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | EBImage_4.18.3.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/EBImage |
| Package Short Url | http://bioconductor.org/packages/EBImage/ |
| Package Downloads Report | Download Stats |
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