- Home
- Bioconductor 3.5
- Software Packages
- BioMedR
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("BioMedR")
In most cases, you don't need to download the package archive at all.
BioMedR
|
|
|
|
|
Generating Various Molecular Representations for Chemicals, Proteins, DNAs/RNAs and Their Interactions
Bioconductor version: Release (3.5)
The BioMedR package offers an R/Bioconductor package generating various molecular representations for chemicals, proteins, DNAs/RNAs and their interactions.
Author: Min-feng Zhu <wind2zhu at 163.com>, Jie Dong <biomed at csu.edu.cn>, Dong-sheng Cao <oriental-cds at 163.com>
Maintainer: Min-feng Zhu <wind2zhu at 163.com>
Citation (from within R,
enter citation("BioMedR")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("BioMedR")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("BioMedR")
| R Script | BioMedR: R/Bioconductor Package for generating various molecular representations for chemicals, proteins, DNAs/RNAs and their interactions | |
| Reference Manual | ||
| Text | README | |
| Text | NEWS |
Details
| biocViews | BiomedicalInformatics, Cheminformatics, DataImport, DataRepresentation, FeatureExtraction, GO, GraphAndNetwork, Proteomics, Software, SystemsBiology |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.5 (R-3.4) (0.5 years) |
| License | Artistic-2.0 |
| Depends | |
| Imports | RCurl, rjson, rcdk (>= 3.3.2), foreach, doParallel, Biostrings, GOSemSim, ChemmineR, fmcsR, pls, randomForest, utils, stats, graphics, methods, org.Hs.eg.db, ChemmineOB |
| LinkingTo | |
| Suggests | RUnit, BiocGenerics |
| SystemRequirements | Java JDK 1.8 or higher |
| Enhances | |
| URL | https://github.com/wind22zhu/BioMedR |
| BugReports | https://github.com/wind22zhu/BioMedR/issues |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | BioMedR_1.0.0.tar.gz |
| Windows Binary | BioMedR_1.0.0.zip |
| Mac OS X 10.11 (El Capitan) | BioMedR_1.0.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/BioMedR |
| Package Short Url | http://bioconductor.org/packages/BioMedR/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
