To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("AnnotationHub")

In most cases, you don't need to download the package archive at all.

AnnotationHub

DOI: 10.18129/B9.bioc.AnnotationHub

Client to access AnnotationHub resources

Bioconductor version: Release (3.5)

This package provides a client for the Bioconductor AnnotationHub web resource. The AnnotationHub web resource provides a central location where genomic files (e.g., VCF, bed, wig) and other resources from standard locations (e.g., UCSC, Ensembl) can be discovered. The resource includes metadata about each resource, e.g., a textual description, tags, and date of modification. The client creates and manages a local cache of files retrieved by the user, helping with quick and reproducible access.

Author: Martin Morgan [cre], Marc Carlson [ctb], Dan Tenenbaum [ctb], Sonali Arora [ctb]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("AnnotationHub")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("AnnotationHub")

Documentation

HTML	R Script	AnnotationHub: Access the AnnotationHub Web Service
HTML	R Script	AnnotationHub: AnnotationHub HOW TO's
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataImport, GUI, Infrastructure, Software, ThirdPartyClient
Version	2.8.3
In Bioconductor since	BioC 2.12 (R-3.0) (4.5 years)
License	Artistic-2.0
Depends	BiocGenerics(>= 0.15.10)
Imports	utils, methods, grDevices, RSQLite, BiocInstaller, AnnotationDbi(>= 1.31.19), S4Vectors, interactiveDisplayBase, httr, yaml
LinkingTo
Suggests	IRanges, GenomicRanges, GenomeInfoDb, VariantAnnotation, Rsamtools, rtracklayer, BiocStyle, knitr, AnnotationForge, rBiopaxParser, RUnit, GenomicFeatures, MSnbase, mzR, Biostrings, SummarizedExperiment, ExperimentHub
SystemRequirements
Enhances	AnnotationHubData
URL
Depends On Me	AnnotationHubData, curatedMetagenomicData, ExperimentHub, ProteomicsAnnotationHubData, RefNet
Imports Me	alpineData, alternativeSplicingEvents.hg19, annotatr, ensembldb, GenomicScores, grasp2db, gwascat, psichomics, pwOmics, REMP, TSRchitect
Suggests Me	AHEnsDbs, Chicago, CINdex, clusterProfiler, DNAshapeR, dupRadar, epiNEM, GenomicRanges, GOSemSim, MSnbase, OrganismDbi, Pbase, VariantAnnotation
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	AnnotationHub_2.8.3.tar.gz
Windows Binary	AnnotationHub_2.8.3.zip
Mac OS X 10.11 (El Capitan)	AnnotationHub_2.8.3.tgz
Source Repository	git clone https://git.bioconductor.org/packages/AnnotationHub
Package Short Url	http://bioconductor.org/packages/AnnotationHub/
Package Downloads Report	Download Stats

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