CHANGES IN VERSION 2.4.1
------------------------
o Adding a min.cpm filter for RNA-seq data to de.ana
CHANGES IN VERSION 2.3.2
------------------------
o Additional sbea methods: gsa, mgsa, padog, globaltest, roast, camera, gsva
o Additional nbea methods: netgsa, degraph, topologygsa, ganpa, cepa
CHANGES IN VERSION 2.1.15
-------------------------
o Slight modification on ORA's hypergeometric p-value calculation according to
http://mengnote.blogspot.de/2012/12/calculate-correct-hypergeometric-p.html
CHANGES IN VERSION 2.1.14
-------------------------
o Adapting GGEA to also deal with 2-column GRNs
CHANGES IN VERSION 2.1.12
-------------------------
o Adapting SPIA to deal with non-kegg gene sets
CHANGES IN VERSION 2.1.10
-------------------------
o Including EmpiricalBrownsMethod (ebm) among sbea methods
CHANGES IN VERSION 1.99.6
-------------------------
o adaption of specific local statistics for RNA-seq data
for sample-permutation methods GSEA, SAFE, and SAMGS
CHANGES IN VERSION 1.99.5
-------------------------
o Including PathNet among nbea methods
CHANGES IN VERSION 1.99.3
-------------------------
o GSEA permutation approximation based on npGSEA
o extended combination functionality
CHANGES IN VERSION 1.99.1
-------------------------
o major overhaul of the look'n'feel based on ReportingTools
o interactive graphics using imageMap
o reworked set and graph view
o new kegg view based on pathview
CHANGES IN VERSION 1.1.3
------------------------
o de.ana: extensions for RNA-seq now includes DESeq and edgeR
o get.go.genesets: new getter for GO genesets
CHANGES IN VERSION 1.1.1
------------------------
o de.ana: now based on limma functionality
o ggea.graph: extended control of layout
o ggea:
* permutation p-value now based on fast edge resampling
* p-value approximation now based on gaussian mixture
* extended control for edge selection (consistency threshold, edge type, ...)
CHANGES IN VERSION 1.0.0
------------------------
o EnrichmentBrowser 1.0.0: Initial release of the 'EnrichmentBrowser' package