To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Rqc")
In most cases, you don't need to download the package archive at all.
Rqc
|
This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see Rqc.
Quality Control Tool for High-Throughput Sequencing Data
Bioconductor version: 3.4
Rqc is an optimised tool designed for quality control and assessment of high-throughput sequencing data. It performs parallel processing of entire files and produces a report which contains a set of high-resolution graphics.
Author: Welliton Souza, Benilton Carvalho <beniltoncarvalho at gmail.com>
Maintainer: Welliton Souza <well309 at gmail.com>
Citation (from within R,
enter citation("Rqc")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Rqc")
Documentation
| HTML | R Script | Using Rqc |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | DataImport, QualityControl, Sequencing, Software |
| Version | 1.8.0 |
| In Bioconductor since | BioC 3.0 (R-3.1) (2.5 years) |
| License | GPL (>= 2) |
| Depends | BiocParallel, ShortRead, ggplot2 |
| Imports | BiocGenerics, Biostrings, IRanges, methods, S4Vectors, knitr (>= 1.7), BiocStyle, plyr, markdown, grid, reshape2, digest, Rcpp (>= 0.11.6), biovizBase, shiny, Rsamtools, GenomicAlignments, GenomicFiles |
| LinkingTo | Rcpp |
| Suggests | testthat |
| SystemRequirements | |
| Enhances | |
| URL | https://github.com/labbcb/Rqc |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | Rqc_1.8.0.tar.gz |
| Windows Binary | Rqc_1.8.0.zip (32- & 64-bit) |
| Mac OS X 10.9 (Mavericks) | Rqc_1.8.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/Rqc/tree/release-3.4 |
| Package Short Url | http://bioconductor.org/packages/Rqc/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
