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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("splineTimeR")
In most cases, you don't need to download the package archive at all.
splineTimeR
|
This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see splineTimeR.
Time-course differential gene expression data analysis using spline regression models followed by gene association network reconstruction
Bioconductor version: 3.3
This package provides functions for differential gene expression analysis of gene expression time-course data. Natural cubic spline regression models are used. Identified genes may further be used for pathway enrichment analysis and/or the reconstruction of time dependent gene regulatory association networks.
Author: Agata Michna
Maintainer: Herbert Braselmann <braselm at helmholtz-muenchen.de>, Agata Michna <agata.michna at helmholtz-muenchen.de>
Citation (from within R,
enter citation("splineTimeR")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("splineTimeR")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("splineTimeR")
| R Script | splineTimeR | |
| Reference Manual |
Details
| biocViews | DifferentialExpression, GeneExpression, GeneSetEnrichment, GraphAndNetwork, NetworkEnrichment, NetworkInference, Regression, Software, TimeCourse |
| Version | 1.0.1 |
| In Bioconductor since | BioC 3.3 (R-3.3) (< 6 months) |
| License | GPL-3 |
| Depends | R (>= 3.3), Biobase, igraph, limma, GSEABase, gtools, splines, GeneNet (>= 1.2.13), longitudinal (>= 1.1.12), FIs |
| Imports | |
| LinkingTo | |
| Suggests | knitr |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | splineTimeR_1.0.1.tar.gz |
| Windows Binary | splineTimeR_1.0.1.zip |
| Mac OS X 10.9 (Mavericks) | splineTimeR_1.0.1.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/splineTimeR/tree/release-3.3 |
| Package Short Url | http://bioconductor.org/packages/splineTimeR/ |
| Package Downloads Report | Download Stats |
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