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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("bioassayR")
In most cases, you don't need to download the package archive at all.
bioassayR
|
This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see bioassayR.
Cross-target analysis of small molecule bioactivity
Bioconductor version: 3.3
bioassayR is a computational tool that enables simultaneous analysis of thousands of bioassay experiments performed over a diverse set of compounds and biological targets. Unique features include support for large-scale cross-target analyses of both public and custom bioassays, generation of high throughput screening fingerprints (HTSFPs), and an optional preloaded database that provides access to a substantial portion of publicly available bioactivity data.
Author: Tyler Backman, Ronly Schlenk, Thomas Girke
Maintainer: Tyler Backman <tbackman at ucr.edu>
Citation (from within R,
enter citation("bioassayR")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("bioassayR")
Documentation
| HTML | R Script | Introduction and Examples |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Bioinformatics, CellBasedAssays, DataImport, Infrastructure, Metabolomics, MicrotitrePlateAssay, Proteomics, Software, Visualization |
| Version | 1.10.15 |
| In Bioconductor since | BioC 2.13 (R-3.0) (3 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.1.0), DBI (>= 0.3.1), RSQLite (>= 1.0.0), methods, Matrix, rjson, BiocGenerics(>= 0.13.8) |
| Imports | XML, ChemmineR |
| LinkingTo | |
| Suggests | BiocStyle, RCurl, biomaRt, cellHTS2, knitr, knitcitations, RefManageR, testthat, ggplot2 |
| SystemRequirements | |
| Enhances | |
| URL | https://github.com/TylerBackman/bioassayR |
| BugReports | https://github.com/TylerBackman/bioassayR/issues |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | bioassayR_1.10.15.tar.gz |
| Windows Binary | bioassayR_1.10.15.zip |
| Mac OS X 10.9 (Mavericks) | bioassayR_1.10.15.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/bioassayR/tree/release-3.3 |
| Package Short Url | http://bioconductor.org/packages/bioassayR/ |
| Package Downloads Report | Download Stats |
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