Package: SeqGSEA
Type: Package
Title: Gene Set Enrichment Analysis (GSEA) of RNA-Seq Data: integrating
        differential expression and splicing
Version: 1.51.0
Date: 2020-11-30
Author: Xi Wang <Xi.Wang@newcastle.edu.au>
Maintainer: Xi Wang <Xi.Wang@dkfz.de>
Description: The package generally provides methods for gene set
        enrichment analysis of high-throughput RNA-Seq data by
        integrating differential expression and splicing. It uses
        negative binomial distribution to model read count data, which
        accounts for sequencing biases and biological variation. Based
        on permutation tests, statistical significance can also be
        achieved regarding each gene's differential expression and
        splicing, respectively.
License: GPL (>= 3)
Depends: Biobase, doParallel, DESeq2
Imports: methods, biomaRt
Suggests: GenomicRanges
biocViews: Sequencing, RNASeq, GeneSetEnrichment, GeneExpression,
        DifferentialExpression, DifferentialSplicing, ImmunoOncology
Config/pak/sysreqs: libicu-dev libpng-dev libxml2-dev libssl-dev
        zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 14:14:28 UTC
RemoteUrl: https://github.com/bioc/SeqGSEA
RemoteRef: HEAD
RemoteSha: d9a1c2a407e5b44bd450ef5f4f13bb8ed77c36e1
NeedsCompilation: no
Packaged: 2025-11-04 07:32:14 UTC; root
Built: R 4.6.0; ; 2025-11-04 07:34:23 UTC; windows
