AWAggregatorData

This is the released version of AWAggregatorData; for the devel version, see AWAggregatorData.

Attribute-Weighted Aggregation Data

Bioconductor version: Release (3.22)

The AWAggregatorData package contains the data associated with the AWAggregator R package. It includes two pre-trained random forest models, one incorporating the average coefficient of variation as a feature, and the other one not including it. It also contains the PSMs in Benchmark Set 1~3 derived from the psm.tsv output files generated by FragPipe, which are used to train the random forest models.

Author: Jiahua Tan [aut, cre] ORCID: 0000-0001-5839-1049 , Gian L. Negri [aut] ORCID: 0000-0001-7722-8888 , Gregg B. Morin [aut] ORCID: 0000-0001-8949-4374 , David D. Y. Chen [aut] ORCID: 0000-0002-3669-6041

Maintainer: Jiahua Tan <jiahuatan at chem.ubc.ca>

Citation (from within R, enter citation("AWAggregatorData")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("AWAggregatorData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AWAggregatorData")

AWAggregatorData vignette	HTML	R Script
Reference Manual	PDF
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ExperimentData, ExperimentHub, MassSpectrometryData, PackageTypeData, Proteome
Version	0.99.4
License	MIT + file LICENSE
Depends	ExperimentHub
Imports
System Requirements
URL	https://github.com/Tan-Jiahua/AWAggregatorData
Bug Reports	https://github.com/Tan-Jiahua/AWAggregatorData/issues

Suggests	BiocStyle, knitr, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me	AWAggregator
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	AWAggregatorData_0.99.4.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/AWAggregatorData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/AWAggregatorData
Package Short Url	https://bioconductor.org/packages/AWAggregatorData/
Package Downloads Report	Download Stats