## ----eval=FALSE--------------------------------------------------------------- # install.packages("BiocManager") # BiocManager::install("BridgeDbR") # install.packages(pkgs=c("rJava", "curl")) # # library(curl) # library(rJava) # library(BridgeDbR) ## ----eval=FALSE--------------------------------------------------------------- # sec2pri = BridgeDbR::loadDatabase("ChEBI_secID2priID.bridge") ## ----eval=FALSE--------------------------------------------------------------- # BridgeDbR::map(sec2pri, source="Ce", identifier="CHEBI:1234") ## ----eval=FALSE--------------------------------------------------------------- # mappedIDs = BridgeDbR::map(sec2pri, source="Ce", identifier="CHEBI:1234") # mappedIDs[intersect(which(mappedIDs[,"target"] == "Ce"),which(mappedIDs[,"isPrimary"] == "T")),] ## ----sessionInfo, echo=FALSE-------------------------------------------------- sessionInfo()