Package: biomformat
Version: 1.38.0
Date: 2023-08-01
Maintainer: Paul J. McMurdie <mcmurdie@alumni.stanford.edu>
License: GPL-2
Title: An interface package for the BIOM file format
Type: Package
Author: Paul J. McMurdie <mcmurdie@alumni.stanford.edu> and Joseph N
        Paulson <jpaulson@jimmy.harvard.edu>
BugReports: https://github.com/joey711/biomformat/issues
URL: https://github.com/joey711/biomformat/, http://biom-format.org/
Description: This is an R package for interfacing with the BIOM format.
        This package includes basic tools for reading biom-format
        files, accessing and subsetting data tables from a biom object
        (which is more complex than a single table), as well as limited
        support for writing a biom-object back to a biom-format file.
        The design of this API is intended to match the python API and
        other tools included with the biom-format project, but with a
        decidedly "R flavor" that should be familiar to R users. This
        includes S4 classes and methods, as well as extensions of
        common core functions/methods.
Imports: plyr (>= 1.8), jsonlite (>= 0.9.16), Matrix (>= 1.2), rhdf5
Depends: R (>= 3.2), methods
Suggests: testthat (>= 0.10), knitr (>= 1.10), BiocStyle (>= 1.6),
        rmarkdown (>= 0.7)
VignetteBuilder: knitr
Collate: 'allClasses.R' 'allPackage.R' 'IO-methods.R' 'BIOM-class.R'
        'validity-methods.R'
biocViews: ImmunoOncology, DataImport, Metagenomics, Microbiome
NeedsCompilation: no
Config/pak/sysreqs: libssl-dev zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:28:59 UTC
RemoteUrl: https://github.com/bioc/biomformat
RemoteRef: RELEASE_3_22
RemoteSha: dc389e0a90b0e5355036debca749e1287d0a4d6a
Packaged: 2025-11-11 13:26:27 UTC; root
Built: R 4.5.2; ; 2025-11-11 13:29:18 UTC; windows
