Changes in version 0.99.3                        

  - Updated vignette to print a select few plots rather than all the
    output plots
  - Added a text document to the inst/script/ directory with specific
    code and instructions for generating the sample pileup files used in
    the examples, vignette and README
  - Fixed bug with verbose argument where verbose=FALSE still printed
    messages to the console
  - Updated use of 'if(verbose == TRUE)' to 'if(verbose)'

                       Changes in version 0.99.2                        

  - Updated vignette and README with BiocManager installation
    instructions
  - Moved Acknowledgements, Funding, and SessionInfo() to 'supplemental
    information' section in vignette
  - Changed TOC_depth from 2 to 3 in vignette
  - Updated formatting of NEWS file
  - Grouped related functions in .R files for easier troubleshooting
  - Add verbose = TRUE/FALSE argument to allow users to choose whether
    to print progress
  - Added co-authors to DESCRIPTION file
  - Added additional logic for input file validation
  - Added better descriptions of input file requirements in the main
    function .man pages
  - Added rendered summary histogram plot to output list
  - Removed all usage of <<-
  - Fixed improper usage of lapply

                       Changes in version 0.99.1                        

  - Fixed unit tests for Bioc submission

                       Changes in version 0.99.0                        

  - Bioc submission