h5mread
This is the development version of h5mread; to use it, please install the devel version of Bioconductor.
A fast HDF5 reader
Bioconductor version: Development (3.21)
The main function in the h5mread package is h5mread(), which allows reading arbitrary data from an HDF5 dataset into R, similarly to what the h5read() function from the rhdf5 package does. In the case of h5mread(), the implementation has been optimized to make it as fast and memory-efficient as possible.
Author: Hervé Pagès [aut, cre] (ORCID:
Maintainer: Hervé Pagès <hpages.on.github at gmail.com>
citation("h5mread")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("h5mread")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("h5mread")| The h5mread package | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataImport, DataRepresentation, Infrastructure, Software |
| Version | 0.99.3 |
| In Bioconductor since | BioC 3.21 (R-4.5) |
| License | Artistic-2.0 |
| Depends | R (>= 4.5), methods, rhdf5, BiocGenerics, SparseArray |
| Imports | stats, tools, rhdf5filters, S4Vectors, IRanges, S4Arrays |
| System Requirements | GNU make |
| URL | https://bioconductor.org/packages/h5mread |
| Bug Reports | https://github.com/hpages/h5mread/issues |
See More
| Suggests | BiocParallel, ExperimentHub, TENxBrainData, HDF5Array, testthat, knitr, rmarkdown, BiocStyle |
| Linking To | Rhdf5lib, S4Vectors |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | h5mread_0.99.3.tar.gz |
| Windows Binary (x86_64) | h5mread_0.99.3.zip |
| macOS Binary (x86_64) | h5mread_0.99.3.tgz |
| macOS Binary (arm64) | h5mread_0.99.3.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/h5mread |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/h5mread |
| Bioc Package Browser | https://code.bioconductor.org/browse/h5mread/ |
| Package Short Url | https://bioconductor.org/packages/h5mread/ |
| Package Downloads Report | Download Stats |