BiocHail
This package is for version 3.21 of Bioconductor; for the stable, up-to-date release version, see BiocHail.
basilisk and hail
Bioconductor version: 3.21
Use hail via basilisk when appropriate, or via reticulate. This package can be used in terra.bio to interact with UK Biobank resources processed by hail.is.
Author: Vincent Carey [aut, cre]
Maintainer: Vincent Carey <stvjc at channing.harvard.edu>
citation("BiocHail")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("BiocHail")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("BiocHail")| 01 BiocHail -- GWAS tutorial | HTML | R Script |
| 02 Working with larger VCF: T2T by chromosome | HTML | R Script |
| 03 Working with UK Biobank summary statistics | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Infrastructure, Software |
| Version | 1.7.1 |
| In Bioconductor since | BioC 3.17 (R-4.3) (2.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 4.3.0), graphics, stats, utils |
| Imports | reticulate, basilisk, BiocFileCache, methods, dplyr, BiocGenerics |
| System Requirements | |
| URL | https://github.com/vjcitn/BiocHail |
| Bug Reports | https://github.com/vjcitn/BiocHail/issues |
See More
| Suggests | knitr, testthat, BiocStyle, ggplot2, DT |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | BiocHail_1.7.1.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/BiocHail |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/BiocHail |
| Bioc Package Browser | https://code.bioconductor.org/browse/BiocHail/ |
| Package Short Url | https://bioconductor.org/packages/BiocHail/ |
| Package Downloads Report | Download Stats |