Package: poem
Title: POpulation-based Evaluation Metrics
Version: 1.0.0
Authors@R: c(
    person("Siyuan", "Luo", email="roseluosy@gmail.com", role=c("cre","aut"), comment=c(ORCID="0009-0007-6404-3244")),
    person("Pierre-Luc", "Germain", email="pierre-luc.germain@hest.ethz.ch", role=c("aut","ctb"),
           comment=c(ORCID="0000-0003-3418-4218")))
Description: This package provides a comprehensive set of external and internal evaluation metrics. It includes 
    metrics for assessing partitions or fuzzy partitions derived from clustering results, as well as for evaluating 
    subpopulation identification results within embeddings or graph representations. Additionally, it provides metrics for 
    comparing spatial domain detection results against ground truth labels, and tools for visualizing spatial errors.
BugReports: https://github.com/RoseYuan/poem/issues
License: GPL (>= 3)
URL: https://roseyuan.github.io/poem/
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
Depends: R (>= 4.1.0)
Imports: aricode, BiocNeighbors, BiocParallel, bluster, clevr, clue,
        cluster, elsa, fclust, igraph, Matrix, matrixStats, mclustcomp,
        methods, pdist, sp, spdep, stats, utils, SpatialExperiment,
        SummarizedExperiment
Suggests: testthat (>= 3.0.0), BiocStyle, knitr, DT, dplyr, kableExtra,
        scico, cowplot, ggnetwork, ggplot2, tidyr, STexampleData
VignetteBuilder: knitr
biocViews: DimensionReduction, Clustering, GraphAndNetwork, Spatial,
        ATACSeq, SingleCell, RNASeq, Software, Visualization
Config/testthat/edition: 3
git_url: https://git.bioconductor.org/packages/poem
git_branch: RELEASE_3_21
git_last_commit: 4510cc2
git_last_commit_date: 2025-04-15
Repository: Bioconductor 3.21
Date/Publication: 2025-04-15
NeedsCompilation: no
Packaged: 2025-04-16 03:00:26 UTC; biocbuild
Author: Siyuan Luo [cre, aut] (ORCID: <https://orcid.org/0009-0007-6404-3244>),
  Pierre-Luc Germain [aut, ctb] (ORCID:
    <https://orcid.org/0000-0003-3418-4218>)
Maintainer: Siyuan Luo <roseluosy@gmail.com>
Built: R 4.5.0; ; 2025-04-16 15:10:04 UTC; windows
