Package: csawBook
Version: 1.14.0
Depends: BiocFileCache, ChIPpeakAnno, chipseqDBData, csaw, edgeR, Gviz,
        org.Mm.eg.db, rebook, rmarkdown, Rsamtools, rtracklayer,
        TxDb.Mmusculus.UCSC.mm10.knownGene
License: GPL-3
MD5sum: b58e3e3fe356fc53217e37d18ac1e18e
NeedsCompilation: no

Package: OHCA
Version: 1.2.0
Depends: R (>= 4.4),
Imports: HiCExperiment, HiCool, HiContacts, HiContactsData, DNAZooData,
        fourDNData, plyinteractions, GenomicInteractions, terra, Rfast,
        WGCNA, diffHic, strawr, multiHiCcompare, TopDom, GOTHiC,
        BSgenome.Hsapiens.UCSC.hg38, ggbio, cowplot, patchwork, fs,
        knitr, BiocStyle, sessioninfo
License: MIT + file LICENSE
MD5sum: baf19a7bd300242e1e900ab559c373a0
NeedsCompilation: no

Package: OSCA
Version: 1.16.0
Depends: BiocStyle, knitr, rebook, rmarkdown
Suggests: OSCA.intro, OSCA.basic, OSCA.advanced, OSCA.workflows,
        OSCA.multisample
License: CC BY 4.0
MD5sum: e937728977f8b10597c939173a68528e
NeedsCompilation: no

Package: OSCA.advanced
Version: 1.14.0
Depends: AnnotationHub, batchelor, BiocFileCache, BiocNeighbors,
        BiocParallel, BiocSingular, bluster, clustree, corral, densvis,
        DropletTestFiles, DropletUtils, edgeR, ggbeeswarm, ggplot2,
        gridExtra, igraph, iSEE, limma, msigdbr, mumosa, org.Mm.eg.db,
        PCAtools, pheatmap, rebook, rmarkdown, Rtsne, scater,
        scDblFinder, scPCA, scran, scRNAseq (>= 2.17.9), scuttle,
        SingleR, slingshot, snifter, TENxBrainData, tradeSeq, TSCAN,
        velociraptor, viridis
Imports: OSCA.workflows, OSCA.basic, OSCA.multisample
Suggests: rmarkdown, knitr
License: CC BY 4.0
MD5sum: 7947ec00c706acd1f40ae8aaac2aa875
NeedsCompilation: no

Package: OSCA.basic
Version: 1.14.1
Depends: AnnotationHub, apcluster, AUCell, BiocFileCache, BiocSingular,
        bluster, celldex, cluster, dendextend, dynamicTreeCut, GO.db,
        gridExtra, GSEABase, igraph, limma, mbkmeans, org.Mm.eg.db,
        pheatmap, rebook, rmarkdown, RMTstat, robustbase, Rtsne,
        scater, scran, scRNAseq, scuttle, SingleR, statmod, viridis
Imports: OSCA.workflows
Suggests: rmarkdown, knitr, OSCA.advanced
License: CC BY 4.0
MD5sum: 250e237dd2ce715e81b37e1c0a584d58
NeedsCompilation: no

Package: OSCA.intro
Version: 1.14.2
Depends: batchelor, BiocFileCache, BiocManager, bluster,
        DropletTestFiles, DropletUtils, gridExtra, knitr,
        LoomExperiment, R.utils, readxl, rebook, rmarkdown,
        rtracklayer, scater, scran, scRNAseq, scuttle,
        SingleCellExperiment, uwot, zellkonverter
Suggests: BiocManager, rmarkdown, knitr
License: CC BY 4.0
MD5sum: eea7bd2ed7dbd1fbfa4f18a4207f3de0
NeedsCompilation: no

Package: OSCA.multisample
Version: 1.14.3
Depends: batchelor, BiocSingular, bluster, DropletUtils, edgeR,
        gridExtra, igraph, MouseGastrulationData, pheatmap, rebook,
        rmarkdown, Rtsne, scater, scran, scuttle, SingleR,
        TENxPBMCData, TSCAN, uwot, viridis
Imports: OSCA.workflows
Suggests: OSCA.basic, rmarkdown, knitr
MD5sum: c1f604d5b13b96909f4dcac3fa80c5b6
NeedsCompilation: no

Package: OSCA.workflows
Version: 1.14.0
Depends: AnnotationHub, batchelor, BiocFileCache, BiocNeighbors,
        BiocParallel, BiocSingular, bluster, celldex, cluster,
        DropletTestFiles, DropletUtils, dynamicTreeCut, edgeR,
        EnsDb.Hsapiens.v86, gridExtra, HCAData, igraph, limma,
        org.Hs.eg.db, org.Mm.eg.db, pheatmap, rebook, rmarkdown,
        scater, scPCA, scran, scRNAseq, scuttle, SingleR, viridis
Suggests: BiocManager, rmarkdown, knitr
License: CC BY 4.0
MD5sum: 02480c93b7530911e66db6504c19750f
NeedsCompilation: no

Package: SingleRBook
Version: 1.16.0
Depends: AnnotationHub, BiocNeighbors, BiocParallel, BiocStyle,
        bluster, celldex, gridExtra, igraph, knitr, ontoProc, pheatmap,
        rebook, rmarkdown, scater, scran, scRNAseq, scuttle, SingleR,
        TENxPBMCData, viridis
MD5sum: 0a311ada8ee788c574018ffe9b13aeac
NeedsCompilation: no