utils::sessionInfo()
## R version 4.4.2 (2024-10-31)
## Platform: x86_64-pc-linux-gnu
## Running under: Ubuntu 24.04.2 LTS
##
## Matrix products: default
## BLAS: /home/biocbuild/bbs-3.20-bioc/R/lib/libRblas.so
## LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.12.0
##
## locale:
## [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
## [3] LC_TIME=en_GB LC_COLLATE=C
## [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
## [7] LC_PAPER=en_US.UTF-8 LC_NAME=C
## [9] LC_ADDRESS=C LC_TELEPHONE=C
## [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
##
## time zone: America/New_York
## tzcode source: system (glibc)
##
## attached base packages:
## [1] stats graphics grDevices utils datasets methods base
##
## other attached packages:
## [1] EpiCompare_1.10.1 BiocStyle_2.34.0
##
## loaded via a namespace (and not attached):
## [1] splines_4.4.2
## [2] BiocIO_1.16.0
## [3] bitops_1.0-9
## [4] ggplotify_0.1.2
## [5] filelock_1.0.3
## [6] tibble_3.2.1
## [7] R.oo_1.27.0
## [8] XML_3.99-0.18
## [9] lifecycle_1.0.4
## [10] lattice_0.22-6
## [11] magrittr_2.0.3
## [12] plotly_4.10.4
## [13] sass_0.4.9
## [14] rmarkdown_2.29
## [15] jquerylib_0.1.4
## [16] yaml_2.3.10
## [17] plotrix_3.8-4
## [18] ggtangle_0.0.6
## [19] cowplot_1.1.3
## [20] DBI_1.2.3
## [21] RColorBrewer_1.1-3
## [22] lubridate_1.9.4
## [23] abind_1.4-8
## [24] zlibbioc_1.52.0
## [25] GenomicRanges_1.58.0
## [26] purrr_1.0.4
## [27] R.utils_2.12.3
## [28] BiocGenerics_0.52.0
## [29] RCurl_1.98-1.16
## [30] yulab.utils_0.2.0
## [31] rappdirs_0.3.3
## [32] GenomeInfoDbData_1.2.13
## [33] IRanges_2.40.1
## [34] S4Vectors_0.44.0
## [35] enrichplot_1.26.6
## [36] ggrepel_0.9.6
## [37] tidytree_0.4.6
## [38] ChIPseeker_1.42.1
## [39] codetools_0.2-20
## [40] DelayedArray_0.32.0
## [41] DOSE_4.0.0
## [42] tidyselect_1.2.1
## [43] aplot_0.2.4
## [44] UCSC.utils_1.2.0
## [45] farver_2.1.2
## [46] matrixStats_1.5.0
## [47] stats4_4.4.2
## [48] BiocFileCache_2.14.0
## [49] GenomicAlignments_1.42.0
## [50] jsonlite_1.8.9
## [51] tools_4.4.2
## [52] treeio_1.30.0
## [53] TxDb.Hsapiens.UCSC.hg19.knownGene_3.2.2
## [54] Rcpp_1.0.14
## [55] glue_1.8.0
## [56] SparseArray_1.6.1
## [57] xfun_0.50
## [58] qvalue_2.38.0
## [59] MatrixGenerics_1.18.1
## [60] GenomeInfoDb_1.42.3
## [61] dplyr_1.1.4
## [62] withr_3.0.2
## [63] BiocManager_1.30.25
## [64] fastmap_1.2.0
## [65] boot_1.3-31
## [66] caTools_1.18.3
## [67] digest_0.6.37
## [68] timechange_0.3.0
## [69] R6_2.6.0
## [70] mime_0.12
## [71] gridGraphics_0.5-1
## [72] seqPattern_1.38.0
## [73] colorspace_2.1-1
## [74] GO.db_3.20.0
## [75] gtools_3.9.5
## [76] RSQLite_2.3.9
## [77] R.methodsS3_1.8.2
## [78] b64_0.1.3
## [79] tidyr_1.3.1
## [80] generics_0.1.3
## [81] data.table_1.16.4
## [82] rtracklayer_1.66.0
## [83] bsplus_0.1.4
## [84] httr_1.4.7
## [85] htmlwidgets_1.6.4
## [86] S4Arrays_1.6.0
## [87] downloadthis_0.4.1
## [88] pkgconfig_2.0.3
## [89] gtable_0.3.6
## [90] blob_1.2.4
## [91] impute_1.80.0
## [92] XVector_0.46.0
## [93] htmltools_0.5.8.1
## [94] bookdown_0.42
## [95] fgsea_1.32.2
## [96] scales_1.3.0
## [97] Biobase_2.66.0
## [98] png_0.1-8
## [99] ggfun_0.1.8
## [100] knitr_1.49
## [101] tzdb_0.4.0
## [102] reshape2_1.4.4
## [103] rjson_0.2.23
## [104] nlme_3.1-167
## [105] curl_6.2.0
## [106] cachem_1.1.0
## [107] stringr_1.5.1
## [108] BiocVersion_3.20.0
## [109] KernSmooth_2.23-26
## [110] parallel_4.4.2
## [111] AnnotationDbi_1.68.0
## [112] restfulr_0.0.15
## [113] pillar_1.10.1
## [114] grid_4.4.2
## [115] vctrs_0.6.5
## [116] gplots_3.2.0
## [117] dbplyr_2.5.0
## [118] evaluate_1.0.3
## [119] readr_2.1.5
## [120] tinytex_0.54
## [121] GenomicFeatures_1.58.0
## [122] magick_2.8.5
## [123] cli_3.6.4
## [124] compiler_4.4.2
## [125] Rsamtools_2.22.0
## [126] rlang_1.1.5
## [127] crayon_1.5.3
## [128] labeling_0.4.3
## [129] plyr_1.8.9
## [130] fs_1.6.5
## [131] stringi_1.8.4
## [132] genomation_1.38.0
## [133] viridisLite_0.4.2
## [134] gridBase_0.4-7
## [135] BiocParallel_1.40.0
## [136] munsell_0.5.1
## [137] Biostrings_2.74.1
## [138] lazyeval_0.2.2
## [139] GOSemSim_2.32.0
## [140] Matrix_1.7-2
## [141] BSgenome_1.74.0
## [142] hms_1.1.3
## [143] patchwork_1.3.0
## [144] bit64_4.6.0-1
## [145] ggplot2_3.5.1
## [146] KEGGREST_1.46.0
## [147] SummarizedExperiment_1.36.0
## [148] AnnotationHub_3.14.0
## [149] igraph_2.1.4
## [150] memoise_2.0.1
## [151] bslib_0.9.0
## [152] ggtree_3.14.0
## [153] fastmatch_1.1-6
## [154] bit_4.5.0.1
## [155] ape_5.8-1