spatialSimGP
This package is for version 3.20 of Bioconductor; for the stable, up-to-date release version, see spatialSimGP.
Simulate Spatial Transcriptomics Data with the Mean-variance Relationship
Bioconductor version: 3.20
This packages simulates spatial transcriptomics data with the mean- variance relationship using a Gaussian Process model per gene.
Author: Kinnary Shah [aut, cre]
, Boyi Guo [aut]
, Stephanie C. Hicks [aut]
Maintainer: Kinnary Shah <kinnaryshahh at gmail.com>
citation("spatialSimGP")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("spatialSimGP")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("spatialSimGP")| spatialSimGP Tutorial | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | GeneExpression, Software, Spatial, Transcriptomics |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.20 (R-4.4) (< 6 months) |
| License | MIT + file LICENSE |
| Depends | R (>= 4.4) |
| Imports | SpatialExperiment, MASS, SummarizedExperiment |
| System Requirements | |
| URL | https://github.com/kinnaryshah/spatialSimGP |
| Bug Reports | https://github.com/kinnaryshah/spatialSimGP/issues |
See More
| Suggests | testthat (>= 3.0.0), STexampleData, ggplot2, knitr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | spatialSimGP_1.0.0.tar.gz |
| Windows Binary (x86_64) | spatialSimGP_1.0.0.zip (64-bit only) |
| macOS Binary (x86_64) | spatialSimGP_1.0.0.tgz |
| macOS Binary (arm64) | spatialSimGP_1.0.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/spatialSimGP |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/spatialSimGP |
| Bioc Package Browser | https://code.bioconductor.org/browse/spatialSimGP/ |
| Package Short Url | https://bioconductor.org/packages/spatialSimGP/ |
| Package Downloads Report | Download Stats |