Honkela A, Gao P, Ropponen J, Rattray M and Lawrence ND (2011). “tigre: Transcription factor Inference through Gaussian process Reconstruction of Expression for Bioconductor.” Bioinformatics, 27(7), pp. 1026-1027. http://doi.org/10.1093/bioinformatics/btr057, http://dx.doi.org/10.1093/bioinformatics/btr057.
Honkela A, Girardot C, Gustafson EH, Liu Y, Furlong EE, Lawrence ND and Rattray M (2010). “Model-based method for transcription factor target identification with limited data.” Proc Natl Acad Sci USA, 107(17), pp. 7793-7798. http://doi.org/10.1073/pnas.0914285107, http://dx.doi.org/10.1073/pnas.0914285107.
Gao P, Honkela A, Rattray M and Lawrence ND (2008). “Gaussian process modelling of latent chemical species: applications to inferring transcription factor activities.” Bioinformatics, 24(16), pp. i70-i75. http://doi.org/10.1093/bioinformatics/btn278.
Lawrence ND, Sanguinetti G and Rattray M (2007). “Modelling transcriptional regulation using Gaussian processes.” In Schölkopf B, Platt JC and Hofmann T (eds.), Advances in Neural Information Processing Systems, volume 19, pp. 785-792. MIT Press, Cambridge, MA.