- Home
- Bioconductor 3.2
- Software Packages
- AtlasRDF
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("AtlasRDF")
In most cases, you don't need to download the package archive at all.
AtlasRDF
|
This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see AtlasRDF.
Gene Expression Atlas query and gene set enrichment package.
Bioconductor version: 3.2
Query the Gene Expression Atlas RDF data at the European Bioinformatics Institute using genes, experimental factors (such as disease, cell type, compound treatments), pathways and proteins. Also contains a function to perform an enrichment of your gene list across Experimental Factor Ontology (EFO) using the Atlas background set.
Author: James Malone, Simon Jupp, Maryam Soleimani
Maintainer: James Malone <malone at ebi.ac.uk>
Citation (from within R,
enter citation("AtlasRDF")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("AtlasRDF")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("AtlasRDF")
| An introduction to the AtlasRDF-R package | ||
| Reference Manual |
Details
| biocViews | DataImport, DataRepresentation, DifferentialExpression, GeneExpression, GeneSetEnrichment, Microarray, Software |
| Version | 1.6.0 |
| In Bioconductor since | BioC 2.14 (R-3.1) (2 years) |
| License | Apache License 2.0 |
| Depends | R (>= 2.10), hash, SPARQL, methods |
| Imports | |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | AtlasRDF_1.6.0.tar.gz |
| Windows Binary | AtlasRDF_1.6.0.zip |
| Mac OS X 10.6 (Snow Leopard) | AtlasRDF_1.6.0.tgz |
| Mac OS X 10.9 (Mavericks) | AtlasRDF_1.6.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/AtlasRDF/tree/release-3.2 |
| Package Short Url | http://bioconductor.org/packages/AtlasRDF/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
