smokingMouse

This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see smokingMouse.

Provides access to smokingMouse project data

Bioconductor version: 3.19

This is an ExperimentHub package that provides access to the data at the gene, exon, transcript and junction level used in the analyses of the smokingMouse project. See https://github.com/LieberInstitute/smokingMouse_Indirects. This datasets contain the expression counts of genes, transcripts, exons and exon-exon junctions across 208 mice samples from pup and adult brains and adult blood. They also contain relevant information of these samples and features, such as conditions, QC metrics and if they were used after filtering steps and also if the features were differently expressed in the different experiments.

Author: Daianna Gonzalez-Padilla [aut, cre]

Maintainer: Daianna Gonzalez-Padilla <glezdaianna at gmail.com>

Citation (from within R, enter citation("smokingMouse")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("smokingMouse")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("smokingMouse")

Introduction to smokingMouse	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ExperimentData, ExperimentHub, ExpressionData, Mus_musculus_Data, RNASeqData
Version	1.2.0
License	Artistic-2.0
Depends
Imports
System Requirements
URL	https://github.com/LieberInstitute/smokingMouse
Bug Reports	https://support.bioconductor.org/t/smokingMouse

Suggests	ExperimentHub, AnnotationHubData, BiocStyle, covr, ExperimentHubData, knitr, RefManageR, rmarkdown, sessioninfo, testthat (>= 3.0.0)
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	smokingMouse_1.2.0.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/smokingMouse
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/smokingMouse
Package Short Url	https://bioconductor.org/packages/smokingMouse/
Package Downloads Report	Download Stats