TENxPBMCData
This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see TENxPBMCData.
PBMC data from 10X Genomics
Bioconductor version: 3.19
Single-cell RNA-seq data for on PBMC cells, generated by 10X Genomics.
Author: Kasper D. Hansen [aut], Davide Risso [aut], Milan Malfait [ctb], Jeroen Gilis [ctb], Theodore Killian [ctb], Murat Cem Kose [ctb], Chong Tang [ctb], Teun van den Brand [ctb], Dania Machlab [ctb], Stephanie Hicks [aut, cre]
Maintainer: Stephanie Hicks <shicks19 at jhu.edu>
citation("TENxPBMCData")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("TENxPBMCData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TENxPBMCData")| Obtaining scRNA-seq data on PBMCs from 10X Genomics | HTML | R Script |
| Reference Manual |
Details
| biocViews | ExperimentData, ExperimentHub, ExpressionData, RNASeqData, SequencingData, SingleCellData |
| Version | 1.22.0 |
| License | CC BY 4.0 |
| Depends | SingleCellExperiment, HDF5Array |
| Imports | AnnotationHub, ExperimentHub |
| System Requirements | |
| URL |
See More
| Suggests | rmarkdown, knitr, BiocStyle, snow, BiocFileCache, BiocParallel |
| Linking To | |
| Enhances | |
| Depends On Me | OSCA.multisample, SingleRBook |
| Imports Me | singleCellTK |
| Suggests Me | ASURAT, ExperimentSubset, adverSCarial, celda, concordexR, decontX, glmGamPoi, iSEE, mbkmeans, schex, scone, scry, sketchR, transformGamPoi |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | TENxPBMCData_1.22.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/TENxPBMCData |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/TENxPBMCData |
| Package Short Url | https://bioconductor.org/packages/TENxPBMCData/ |
| Package Downloads Report | Download Stats |