SomaScan.db
This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see SomaScan.db.
Somalogic SomaScan Annotation Data
Bioconductor version: 3.19
An R package providing extended biological annotations for the SomaScan Assay, a proteomics platform developed by SomaLogic Operating Co., Inc. The annotations in this package were assembled using data from public repositories. For more information about the SomaScan assay and its data, please reference the 'SomaLogic/SomaLogic-Data' GitHub repository.
Author: Amanda Hiser [cre, aut] 
, SomaLogic Operating Co., Inc. [cph, fnd]
Maintainer: Amanda Hiser <ahiser at somalogic.com>
citation("SomaScan.db")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("SomaScan.db")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("SomaScan.db")| Advanced Exploration of the SomaScan Menu | HTML | R Script |
| Example ADAT Workflow Using SomaScan.db | HTML | R Script |
| Introduction to SomaScan.db | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | AnnotationData, ChipDb, Homo_sapiens |
| Version | 0.99.10 |
| License | MIT + file LICENSE |
| Depends | R (>= 4.3.0), AnnotationDbi(>= 1.56.2), methods |
| Imports | DBI, org.Hs.eg.db(>= 3.14.0) |
| System Requirements | |
| URL | https://somalogic.com https://github.com/SomaLogic/SomaScan.db/ |
| Bug Reports | https://github.com/SomaLogic/SomaScan.db/issues |
See More
| Suggests | annotate, BiocStyle, dplyr, GO.db, KEGGREST, knitr, rmarkdown, SomaDataIO, testthat (>= 3.0.0), tibble, withr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | SomaScan.db_0.99.10.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Package Short Url | https://bioconductor.org/packages/SomaScan.db/ |
| Package Downloads Report | Download Stats |