BSgenome.Hsapiens.UCSC.hg19

This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see BSgenome.Hsapiens.UCSC.hg19.

Full genome sequences for Homo sapiens (UCSC version hg19, based on GRCh37.p13)

Bioconductor version: 3.19

Full genome sequences for Homo sapiens (Human) as provided by UCSC (hg19, based on GRCh37.p13) and stored in Biostrings objects.

Author: The Bioconductor Dev Team

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("BSgenome.Hsapiens.UCSC.hg19")):

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BSgenome.Hsapiens.UCSC.hg19")

For older versions of R, please refer to the appropriate Bioconductor release.


Reference Manual	PDF

biocViews	AnnotationData, BSgenome, Genetics, Homo_sapiens
Version	1.4.3
License	Artistic-2.0
Depends	BSgenome(>= 1.54.0)
Imports	BSgenome
System Requirements
URL

Suggests
Linking To
Enhances
Depends On Me	CODEX, SCOPE, traseR, BSgenome.Hsapiens.UCSC.hg19.masked, annotation, sequencing, variants
Imports Me	ATACCoGAPS, HiLDA, MADSEQ, RCAS, RareVariantVis, YAPSA, appreci8R, cfDNAPro, circRNAprofiler, decompTumor2Sig, epiregulon, katdetectr, musicatk, BSgenome.Hsapiens.UCSC.hg19.masked, TCGAWorkflow
Suggests Me	ATACseqQC, AneuFinder, BBCAnalyzer, BadRegionFinder, Basic4Cseq, CNEr, CNVfilteR, CRISPRseek, ChIPpeakAnno, DAMEfinder, DNAshapeR, GRaNIE, GUIDEseq, GenVisR, GenomicAlignments, GenomicFeatures, GreyListChIP, Gviz, HiCDCPlus, InPAS, IntEREst, IsoformSwitchAnalyzeR, MEDIPS, MesKit, MethReg, MiRaGE, MinimumDistance, MutationalPatterns, ORFik, OrganismDbi, ProteoDisco, R453Plus1Toolbox, REMP, RSVSim, RiboCrypt, RiboProfiling, Rsamtools, SGSeq, SigsPack, UMI4Cats, VariantAnnotation, biovizBase, bnbc, chromVAR, customProDB, esATAC, exomePeak2, gcapc, ggbio, gmapR, h5vc, karyoploteR, maftools, methodical, methrix, motifTestR, motifbreakR, motifmatchr, pageRank, pipeFrame, plotgardener, plyranges, qsea, rGADEM, rtracklayer, signeR, supersigs, svaNUMT, wavClusteR, FDb.FANTOM4.promoters.hg19, FDb.UCSC.snp135common.hg19, FDb.UCSC.snp137common.hg19, SNPlocs.Hsapiens.dbSNP144.GRCh37, SNPlocs.Hsapiens.dbSNP155.GRCh37, XtraSNPlocs.Hsapiens.dbSNP144.GRCh37, MicroSEC, MOCHA, sigminer
Links To Me

Follow Installation instructions to use this package in your R session.

Source Package	BSgenome.Hsapiens.UCSC.hg19_1.4.3.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Package Short Url	https://bioconductor.org/packages/BSgenome.Hsapiens.UCSC.hg19/
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